Author

Piotr Rutkowski

Institute of Physical ChemistryORCID 0000-0001-8009-0816Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Approach:diffusion model· 1 Research Focus:dimensionality reduction· 1 Research Focus:imputation· 1 Assay:multiome· 1

Frequent Co-Authors

Marcin TabakaiD· 2 shared Damian PanasiD· 1 shared Natalia OchockaiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBioinformatics

Marcin TabakaORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 23, 2025

Identifying multimodal molecular programs with mTopic.

Piotr Rutkowski, Natalia Ochocka, Damian Panas, Marcin Tabaka

This paper introduces mTopic, a topic modeling framework for analyzing multimodal molecular data across single-cell and spatial contexts, enabling identification of coherent molecular programs and cross-modality associations.

DOI 10.64898/2025.12.21.695756

multiomestatistical model

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedMar 29, 2025

Ocelli: an open-source tool for the visualization of developmental multimodal single-cell data

Piotr Rutkowski, Marcin Tabaka

Ocelli is a Python tool for visualizing developmental multimodal single-cell data using diffusion-based modeling, improving computational efficiency and low-dimensional representation quality.

2 citations

scRNA-seqscATAC-seq

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