Author

Zhiwei Liu

Westlake UniversityORCID 0000-0001-8045-9177Unclaimed ORCID profile · follow to get notified of new preprints

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Zhiwei Liu1 paper · Rowan University

Biology Disciplines

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Systems Biology· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1 Research Focus:protein structure prediction· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Tiannan GuoiD· 2 shared E WeinaniD· 1 shared guangmei zhang· 1 shared Han WeniD· 1 shared Honghan Cheng· 1 shared Lingling Tan· 1 shared Liujia QianiD· 1 shared Peijie ZhouiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

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10 top collaborators · 37 mutual co-author links

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2 shared papersSystems Biology

Tiannan GuoORCID

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2 papers

Recent·Most cited

Systems BiologyNature CommunicationsPeer-reviewedApr 14, 2025

DIA-BERT: pre-trained end-to-end transformer models for enhanced DIA proteomics data analysis

Zhiwei Liu, Pu‐Kun Liu, Yingying Sun…·Tiannan Guo

DIA-BERT improves DIA proteomics analysis by using pre-trained transformer models, achieving higher protein and peptide identifications than DIA-NN in cancer samples.

17 citationstop 4%

humanproteomics

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Systems BiologybioRxivPreprintFeb 7, 2025

A perturbation proteomics-based foundation model for virtual cell construction

Rui Sun, Liujia Qian, Yongge Li…·Tiannan Guo

The paper develops a foundation model using perturbation proteomics data to predict drug responses and improve breast cancer prognosis.

10 citations

humanproteomics

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