Author

Safina Abdul Razzak

Aga Khan UniversityORCID 0000-0001-8073-0684Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Akbar KanjiiD· 2 shared M. Kamran AzimiD· 2 shared Rumina HasaniD· 2 shared Waqasuddin KhaniD· 2 shared Zahra HasaniD· 2 shared Asghar Nasir· 1 shared Kiran Iqbal MasoodiD· 1 shared Mohammad Buksh Dharejo· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersBioinformatics

Akbar KanjiORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 24, 2023

A Versatile Tool for Precise Variant Calling in Mycobacterium tuberculosis Genetic Polymorphisms

Safina Abdul Razzak, Zahra Hasan, M. Kamran Azim…·Rumina Hasan

The paper introduces MTB-VCF, a variant calling pipeline for Mycobacterium tuberculosis that identifies sequence variations in resistance genes with high specificity and sensitivity.

1 citation

whole-genome sequencingstatistical model

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GenomicsbioRxivPreprintAug 4, 2020

SARS-CoV-2 genome analysis of strains in Pakistan reveals GH, S and L clade strains at the start of the pandemic

Najia Karim Ghanchi, Kiran Iqbal Masood, Asghar Nasir…·Rumina Hasan

The paper analyzes SARS-CoV-2 strains from Pakistan early in the pandemic, identifying GH, S, L, and I clades and their mutations.

7 citations

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintOct 3, 2017

Comparative Transcriptomics of Mango (Mangifera indica L.) Cultivars Provide Insights of Biochemical Pathways Involved in Flavor and Color

Waqasuddin Khan, Safina Abdul Razzak, M. Kamran Azim

The paper compares transcriptomes of four mango cultivars to identify biochemical pathways involved in flavor and color, revealing key metabolites and biosynthetic pathways.

2 citations

plant (other)bulk RNA-seq

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