Author

Holly M. Steininger

University of California, San FranciscoORCID 0000-0001-8098-3753Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Spencer DiamondiD· 2 shared Susan V. LynchiD· 2 shared Allison K. GuitoriD· 1 shared Ariane R. PanzeriD· 1 shared Carlos E. Iglesias-AguirreiD· 1 shared Daniel M. PortikiD· 1 shared Jeremy E. WilkinsoniD· 1 shared Jillian F. BanfieldiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMicrobiology

Spencer DiamondORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintMay 4, 2026

Carbohydrate Metabolism Differs in Infants by Asthma-risk Status and is Associated with the Functional Potential of Bacteroides cellulosilyticus

Holly M. Steininger, Carlos E. Iglesias-Aguirre, Ariane R. Panzer…·Susan V. Lynch

This study identifies microbial and metabolic differences in 6-month-old infants at high asthma risk versus healthy controls, linking Bacteroides cellulosilyticus and other species to metabolic profiles associated with asthma risk.

1 citation

humanmetagenomics

MicrobiologybioRxivPreprintMar 28, 2026

Metagenomic strain-resolved DNA modification patterns link extrachromosomal genetic elements to host strains

Shuai Wang, Allison K. Guitor, Luis E. Valentin-Alvarado…·Rohan Sachdeva

The paper introduces MODIFI, a tool for detecting DNA modifications in metagenomes, and identifies ECE-host linkages in environmental and human samples.

1 citation

humanmetagenomics