Author

Fani Derveni

Cornell UniversityORCID 0000-0001-8159-0345Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 1 Assay:imaging· 1 Approach:statistical model· 1

Frequent Co-Authors

Ana Marija JakšićiD· 1 shared Andrew C. OatesiD· 1 shared Can AztekiniD· 1 shared Ece Naz BilgiciD· 1 shared Feyza Nur ArslaniD· 1 shared Fides Lea ZenkiD· 1 shared Pedro M. ReisiD· 1 shared Samuel Sagar Bourgeat· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Ana Marija JakšićORCID

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1 paper

Recent·Most cited

TopoTome: Topology-informed unsupervised segmentation and analysis of 3D images

Samuel Sagar Bourgeat, Fani Derveni, Victoire Gamblin, Ece Naz Bilgic, Feyza Nur Arslan, Andrew C. Oates, Can Aztekin, Fides Lea Zenk, Pedro M. Reis, Ana Marija Jakšić

TopoTome is an unsupervised 3D image segmentation algorithm that outperforms existing methods by using topological data analysis to detect and segment structural features in biological images.

bioRxiv · Sep 26, 2025 · PreprintBioinformatics