Author

Pasan Chinthana Fernando

University of ColomboORCID 0000-0001-8160-8429Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Assay:protein structure· 3 Organism:mouse· 2 Organism:plant (other)· 2 Organism:zebrafish· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Erliang ZengiD· 2 shared Janith WeeramaniD· 2 shared Paula MabeeiD· 2 shared M. R. P. De Silva· 1 shared Samadhi S. WimalagunasekaraiD· 1 shared Senuri Piyatissa· 1 shared Shamala Tirimanne· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 7 mutual co-author links

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2 shared papersBioinformatics

Erliang ZengORCID

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4 papers

Recent·Most cited

Systems BiologyBMC Plant BiologyPeer-reviewedMay 8, 2025

Prediction of new candidate proteins and analysis of sub-modules and protein hubs associated with seed development in rice (Oryza sativa) using an ensemble network-based systems biology approach.

M. R. P. De Silva, Janith Weeraman, Senuri Piyatissa, Pasan Chinthana Fernando

The paper predicts 196 new candidate proteins and identifies 14 sub-modules and hub proteins involved in rice seed development using an ensemble network-based approach.

3 citations

plant (other)protein structure

𝕏 PostBluesky

BioinformaticsJournal of Genetic Engineering and BiotechnologyPeer-reviewedMay 28, 2023

Protein-protein interaction (PPI) network analysis reveals important hub proteins and sub-network modules for root development in rice (Oryza sativa)

Samadhi S. Wimalagunasekara, Janith Weeraman, Shamala Tirimanne, Pasan Chinthana Fernando

The paper analyzes a PPI network for root development in rice to identify hub proteins and sub-network modules, revealing 75 novel candidate proteins and 6 sub-modules.

51 citationstop 3%

plant (other)protein structure

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 28, 2021

Gene network module changes associated with the vertebrate fin to limb transition

Pasan Chinthana Fernando, Paula Mabee, Erliang Zeng

This study identifies gene network module changes during the vertebrate fin to limb transition by comparing zebrafish and mouse gene networks.

DOI 10.1101/2021.01.28.428646

zebrafishmouse

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BioinformaticsBMC BioinformaticsPeer-reviewedOct 7, 2020

Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities

Pasan Chinthana Fernando, Paula Mabee, Erliang Zeng

The paper integrates anatomy ontology data with PPI networks to improve candidate gene prediction accuracy for anatomical entities in zebrafish and mouse.

16 citations

zebrafishmouse

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