Author

Jonathan Sheu

Chan Zuckerberg Initiative (United States)ORCID 0000-0001-8249-4013Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Approach:statistical model· 3 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1

Frequent Co-Authors

Boris DimitroviD· 3 shared Charles F. A. de BourcyiD· 3 shared James WangiD· 3 shared Joseph L. DeRisiiD· 3 shared Katrina KalantariD· 3 shared Rebecca Egger· 3 shared Yun-Fang Juan· 3 shared Akshaya RameshiD· 2 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Boris DimitrovORCID

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3 papers

Recent·Most cited

BioinformaticsGigaSciencePeer-reviewedOct 1, 2020

IDseq - An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring

Katrina Kalantar, Tiago Rodrigues De Carvalho, Charles F. A. de Bourcy…·Joseph L. DeRisi

IDseq provides a cloud-based metagenomics pipeline for pathogen detection, enabling analysis of mNGS data with tools for taxonomic assignment and novel pathogen identification.

410 citationstop 1%

metagenomicsstatistical model

𝕏 PostBluesky

GenomicsmBioPeer-reviewedDec 16, 2019

Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive Chikungunya virus outbreak and other unrealized pathogens

Senjuti Saha, Akshaya Ramesh, Katrina Kalantar…·Joseph L. DeRisi

This study uses metagenomic sequencing to identify pathogens in pediatric meningitis cases in Bangladesh, revealing a Chikungunya virus outbreak and other previously undetected causes.

97 citationstop 1%

humanmetagenomics

𝕏 PostBluesky

GenomicsbioRxivPreprintAug 6, 2018

Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis

Akshaya Ramesh, Sara Nakielny, Jennifer Hsu…·Joseph L. DeRisi

This study uses metagenomic sequencing and the IDseq platform to identify microbial pathogens in Ugandan children with fever, revealing common pathogens and novel viruses.

7 citations

humanmetagenomics

𝕏 PostBluesky