Author

Koji Nuida

Japan Science and Technology AgencyORCID 0000-0001-8259-9958Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:proteomics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Kana ShimizuiD· 3 shared Goichiro Hanaoka· 1 shared Gunnar Rätsch· 1 shared Hiroki SudoiD· 1 shared Hiromi Arai· 1 shared Jun Sakuma· 1 shared Kiyoshi AsaiiD· 1 shared Koji Tsuda· 1 shared

Activity by Year

2015-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersBioinformatics

Kana ShimizuORCID

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3 papers

Recent·Most cited

BioinformaticsIEEE Transactions on Computational Biology and BioinformaticsPeer-reviewedMar 8, 2018

Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search

Hiroki Sudo, Masanobu Jimbo, Koji Nuida, Kana Shimizu

The paper introduces a privacy-preserving string search algorithm that operates in logarithmic time relative to alphabet size, demonstrating efficiency on protein sequences and clinical texts.

16 citations

proteomicsmetagenomics

𝕏 PostBluesky

GenomicsBioinformaticsPeer-reviewedJun 1, 2016

Efficient Privacy-Preserving String Search and an Application in Genomics

Kana Shimizu, Koji Nuida, Gunnar Rätsch

The paper develops a privacy-preserving method for searching genetic information in genomic databases and demonstrates its efficiency on real data.

DOI 10.1093/bioinformatics/btw050

humanwhole-genome sequencing

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BioinformaticsBMC BioinformaticsPeer-reviewedDec 9, 2015

Privacy-preserving search for chemical compound databases

Kana Shimizu, Koji Nuida, Hiromi Arai…·Kiyoshi Asai

The paper develops a privacy-preserving protocol for searching chemical compound databases, enabling secure queries without revealing sensitive information.

DOI 10.1186/1471-2105-16-s18-s6

statistical modeldrug response / drug discovery

𝕏 PostBluesky