Author

Piyush Ranjan

University of MichiganORCID 0000-0001-8293-6889Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Organism:bacteria (other)· 2 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Assay:long-read sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

Robert P. DicksoniD· 4 shared David T. BlaauwiD· 2 shared Jack WaddeniD· 2 shared Alan P. BoyleiD· 1 shared Annastasia PetouhoffiD· 1 shared Catherine Wellman· 1 shared Clara Smith· 1 shared Erika Martínez Nieves· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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4 shared papersMicrobiology

Robert P. DicksonORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

GenomicGapID: Leveraging Spatial Distribution of Conserved Genomic Sites for Broad-Spectrum Microbial Identification

Vishwaratn Asthana, Pallavi Bugga, Clara Smith, Catherine Wellman, Zachary Dwight, Piyush Ranjan, Erika Martínez Nieves, Robert P. Dickson, J. Scott VanEpps

GenomicGapID uses conserved genomic site spacing to create universal primers for broad microbial identification, achieving high coverage with few primer sets.

Microbiology Spectrum · Mar 14, 2025Peer-reviewedMicrobiology

Alveolar metabolite availability facilitates secondary infection by Pseudomonas aeruginosa in acutely injured lungs

Jennifer M. Baker, Thomas L. Flott, Laura A. McLellan, Ingrid Gisell Bustos, Jose L. Guerrero, Lina Méndez, Annastasia Petouhoff, Piyush Ranjan, Joseph D. Metcalf, Roderick A. McDonald, Nicole R. Falkowski, Ying He, Mónica P. Cala, Gary B. Huffnagle, Michael W. Sjoding, , Robert P. Dickson

This study shows that lung injury alters the alveolar metabolic environment, promoting Pseudomonas aeruginosa growth and secondary infection in ALI/ARDS.

bioRxiv · Dec 18, 2024 · PreprintMicrobiology

Rapid Real-time Squiggle Classification for Read Until Using RawMap

Harisankar Sadasivan, Jack Wadden, Kush Goliya, Piyush Ranjan, Robert P. Dickson, David T. Blaauw, Reetuparna Das, Satish Narayanasamy

RawMap is a fast and accurate classifier for filtering non-target reads in real-time nanopore sequencing, improving efficiency and reducing costs.

Archives of Clinical and Biomedical Research · Jan 1, 2023Peer-reviewedBioinformatics

Real-Time, Direct Classification of Nanopore Signals with SquiggleNet

Yuwei Bao, Jack Wadden, John R. Erb‐Downward, Piyush Ranjan, Weichen Zhou, Torrin L. McDonald, Ryan E. Mills, Alan P. Boyle, Robert P. Dickson, David T. Blaauw, Joshua D. Welch

SquiggleNet classifies nanopore signals in real time with high accuracy, outperforming traditional methods in speed and memory usage.

bioRxiv · Jan 15, 2021 · PreprintBioinformatics