Author
University of MichiganORCID 0000-0002-2832-458XUnclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Juechu Dong, Xueshen Liu, Harisankar Sadasivan, Sriranjani Sitaraman, Satish Narayanasamy
mm2-gb accelerates Minimap2's chaining step on GPU, improving performance for long DNA reads without sacrificing accuracy.
ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) · Nov 22, 2024Peer-reviewedGenomics
Harisankar Sadasivan, Daniel Stiffler, Ajay Tirumala, Johnny Israeli, Satish Narayanasamy
DTWax optimizes the sDTW algorithm for GPU to improve sequencing speed and compute efficiency in nanopore sequencing.
Journal of Biotechnology and Biomedicine · Jan 1, 2024Peer-reviewedBioinformatics
Harisankar Sadasivan, Milos Maric, Eric T. Dawson, Vishanth Iyer, Johnny Israeli, Satish Narayanasamy
The paper accelerates Minimap2 for long read alignment on GPUs by optimizing the chaining step, achieving significant speedup and cost reduction.
Journal of Biotechnology and Biomedicine · Jan 1, 2023Peer-reviewedGenomics
Harisankar Sadasivan, Jack Wadden, Kush Goliya, Piyush Ranjan, Robert P. Dickson, David T. Blaauw, Reetuparna Das, Satish Narayanasamy
RawMap is a fast and accurate classifier for filtering non-target reads in real-time nanopore sequencing, improving efficiency and reducing costs.
Archives of Clinical and Biomedical Research · Jan 1, 2023Peer-reviewedBioinformatics