Author

Andrik Rampun

InsigneoORCID 0000-0001-8340-2408Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Assay:imaging· 1 Approach:statistical model· 1 Organism:zebrafish· 1

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Elisabeth KugleriD· 1 shared Paul A. ArmitageiD· 1 shared Tim ChicoiD· 1 shared

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2022-2022 · peak 1/yr

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1 shared paperDevelopmental Biology

Elisabeth KuglerORCID

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1 paper

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Developmental BiologyCurrent ProtocolsPeer-reviewedMay 1, 2022

Segmentation of the Zebrafish Brain Vasculature from Light Sheet Fluorescence Microscopy Datasets

Elisabeth Kugler, Andrik Rampun, Tim Chico, Paul A. Armitage

The paper compares segmentation methods for zebrafish brain vasculature, finds U-Net outperforms SegNet, and highlights the effectiveness of Sato enhancement and Otsu thresholding.

8 citations

zebrafishimaging

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