Author

Sébastien Tosi

Institute for Research in BiomedicineORCID 0000-0001-8348-2778Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:imaging· 2 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Baldomero OlivaiD· 1 shared Benjamin PavieiD· 1 shared Carlo ManzoiD· 1 shared Devrim ÜnayiD· 1 shared Eric KrameriD· 1 shared Gino Michiels· 1 shared Graeme BalliD· 1 shared Lassi PaavolaineniD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Baldomero OlivaORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedAug 1, 2026

ExoFILT: Transfer learning for robust and accelerated analysis of exocytosis single-particle tracking data

Eric Kramer, Laura I. Betancur, Sasha Meek…·Oriol Gallego

ExoFILT uses transfer learning to automate exocytic event detection in single-particle tracking data, improving speed and consistency.

DOI 10.1093/bioinformatics/btag589

imagingdeep learning

BioinformaticsPatternsPeer-reviewedJun 1, 2020

BIAFLOWS: A collaborative framework to reproducibly deploy and benchmark bioimage analysis workflows

Ulysse Rubens, Romain Mormont, Lassi Paavolainen…·Sébastien Tosi

BIAFLOWS provides a framework to document, deploy, and benchmark bioimage analysis workflows, enabling reproducible and fair comparisons of image analysis methods.

36 citations

imagingexperimental assay