Author

John Wu

Nationwide Children's HospitalORCID 0000-0001-8370-7738Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Alexxai V. KravitziD· 1 shared Amy Wagner· 1 shared Ciriyam JayaprakashiD· 1 shared Cynthia CheniD· 1 shared Erik S. MusiekiD· 1 shared Jayajit DasiD· 1 shared Mason R. BarrettiD· 1 shared Matt GaidicaiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperNeuroscience

Alexxai V. KravitzORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

NeurosciencebioRxivPreprintOct 24, 2026

Tumbly: An Open-Source Home-Cage Device for Time-Restricted Feeding in Mice

Mason R. Barrett, Cynthia Chen, Winston Li…·Alexxai V. Kravitz

Tumbly is an open-source, automated device for time-restricted feeding in mice, validated to maintain body weight and food intake with low error rates.

DOI 10.64898/2026.10.19.760239

mouseexperimental assay

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Systems Biologynpj Systems Biology and ApplicationsPeer-reviewedSep 22, 2023

BioNetGMMFit: Estimating Parameters of a BioNetGen Model from Time-Stamped Snapshots of Single Cells

John Wu, William C. L. Stewart, Ciriyam Jayaprakash, Jayajit Das

BioNetGMMFit estimates parameters of BioNetGen models from time-stamped single-cell data and provides confidence intervals for improved accuracy.

1 citation

scRNA-seqstatistical model

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