Author

Paul L Burmedi

Heidelberg UniversityORCID 0000-0001-8391-0031Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1

Frequent Co-Authors

Julio Sáez-RodrígueziD· 2 shared Ricardo O. Ramirez FloresiD· 2 shared Alberto ValdeolivasiD· 1 shared Aurélien J. F. DugourdiD· 1 shared Avia Walfisch· 1 shared Bence SzalaiiD· 1 shared Charlotte BoysiD· 1 shared Daniel DimitroviD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Julio Sáez-RodríguezORCID

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2 papers

Recent·Most cited

BioinformaticsMolecular Systems BiologyPeer-reviewedJun 25, 2026

ParTIpy: A Scalable Framework for Archetypal Analysis and Pareto Task Inference

Philipp Sven Lars Schäfer, Leoni Zimmermann, Paul L Burmedi…·Julio Sáez-Rodríguez

ParTIpy scales archetypal analysis for biological trade-offs and integrates with single-cell workflows, enabling task inference in large datasets.

3 citationstop 5%

bulk RNA-seqstatistical model

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BioinformaticsNature CommunicationsPeer-reviewedJun 9, 2022

Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data

Daniel Dimitrov, Dénes Türei, Martín Garrido‐Rodríguez…·Julio Sáez-Rodríguez

The paper compares 15 resources and 6 methods for inferring cell-cell communication from single-cell RNA data, finding significant variation in predicted interactions and biological interpretations.

664 citationstop 1%

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