Author

Leoni Zimmermann

Heidelberg UniversityORCID 0009-0004-9338-4978Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:clustering· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1

Frequent Co-Authors

Jovan TanevskiiD· 2 shared Julio Sáez-RodrígueziD· 2 shared Philipp Sven Lars SchäferiD· 2 shared Ricardo O. Ramirez FloresiD· 2 shared Avia Walfisch· 1 shared Daniel Toro DomingueziD· 1 shared Einat Shaer TamariD· 1 shared José Liñares-BlancoiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Jovan TanevskiORCID

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2 papers

Recent·Most cited

ParTIpy: A Scalable Framework for Archetypal Analysis and Pareto Task Inference

Philipp Sven Lars Schäfer, Leoni Zimmermann, Paul L Burmedi, Avia Walfisch, Noa Goldenberg, Shira Yonassi, Einat Shaer Tamar, Miri Adler, Jovan Tanevski, Ricardo O. Ramirez Flores, Julio Sáez-Rodríguez

ParTIpy scales archetypal analysis for biological trade-offs and integrates with single-cell workflows, enabling task inference in large datasets.

Molecular Systems Biology · Jun 25, 2026Peer-reviewedBioinformatics

A transcriptional patient map of systemic lupus erythematosus reveals disease-related multicellular immune programs conserved between blood and kidney

José Liñares-Blanco, Philipp Sven Lars Schäfer, Leoni Zimmermann, Ricardo Melo Ferreira, Daniel Toro Dominguez, Pedro Carmona‐Sáez, Jovan Tanevski, Marta Eugenia Alarcón-Riquelme, Michael T. Eadon, Ricardo O. Ramirez Flores, Julio Sáez-Rodríguez

This paper constructs a transcriptional patient map of SLE using single-cell and bulk RNA-seq data, identifying conserved immune programs in blood and kidney tissue.

bioRxiv · May 1, 2026 · PreprintSystems Biology