Author

Medha Pandey

Dana-Farber Cancer InstituteORCID 0000-0001-8409-5032Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

Garyoung Gary LeeiD· 2 shared Gunsagar Singh GulatiiD· 2 shared Jacob E. BerchuckiD· 2 shared Sadia D. Shahbazi· 2 shared Sylvan C. BacaiD· 2 shared Taylor A. Hoggood· 2 shared Adam G. SowalskyiD· 1 shared Alexis Yang· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersCancer Biology

Garyoung Gary LeeORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintOct 28, 2026

Histone modifications define distinct nucleosome positions in cell-free DNA

Yukun Ou, Gunsagar Singh Gulati, Caroline F. Tyndall…·Sylvan C. Baca

This paper identifies histone modification-associated nucleosome positions in cfDNA that correlate with tumor fraction and cancer state across multiple cancers.

DOI 10.64898/2026.10.26.761423

humanChIP-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 6, 2025

A chromatin fiber model explains cell-free DNA fragmentation signatures of active regulatory elements

Alexis Yang, Garyoung Gary Lee, Surya B. Chhetri…·Sylvan C. Baca

The paper infers enhancer activity from cfDNA fragmentation patterns and proposes a chromatin fiber model to explain these signatures.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky