Nancy Ontiveros‐Palacios

The paper describes methods for automated viral ncRNA annotation and programmatic access to Rfam data via its API, enabling integration into bioinformatics workflows.

GOFlowLLM automates miRNA literature curation using LLMs and flowcharts, achieving high accuracy and efficiency in annotating gene silencing data.

The paper provides the first full-genome multiple sequence alignment for all known pestivirus species and identifies conserved and novel RNA secondary structures.

RNAcentral integrates literature and gene-level data to enhance non-coding RNA sequence analysis and functional understanding.

Rfam 15.0 expands coverage to 26,106 genomes, improves RNA family annotations with 3D structures, and synchronizes with miRBase, enhancing RNA research and machine learning applications.

The paper identifies conserved RNA secondary structures in HCV genomes through full-genome alignment and analysis, showing conservation in specific regions like core, NS5A, and NS5B.