Sandra Triebel

The paper describes methods for automated viral ncRNA annotation and programmatic access to Rfam data via its API, enabling integration into bioinformatics workflows.

ViralClust reduces large viral sequence datasets by clustering, preserving genetic diversity and reducing computational burden.

The paper provides the first full-genome multiple sequence alignment for all known pestivirus species and identifies conserved and novel RNA secondary structures.

AnchoRNA improves full-genome alignment of viral sequences by identifying conserved anchor regions, enhancing alignment accuracy and efficiency.

Rfam 15.0 expands coverage to 26,106 genomes, improves RNA family annotations with 3D structures, and synchronizes with miRBase, enhancing RNA research and machine learning applications.

The paper identifies conserved RNA secondary structures in HCV genomes through full-genome alignment and analysis, showing conservation in specific regions like core, NS5A, and NS5B.

The paper assembles 35 European Mycoplasma bovis genomes using a hybrid approach, identifies clade-specific genes, and reveals geographic clustering in a phylogenetic tree.

Magnipore identifies differential signal shifts between SARS-CoV-2 samples to detect mutations and potential modifications in Oxford Nanopore sequencing data.