Author

Jay D. Raman

Pennsylvania State UniversityORCID 0000-0001-8480-8397Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Approach:statistical model· 1

Frequent Co-Authors

David J. DeGraffiD· 2 shared Hironobu YamashitaiD· 2 shared Joshua I. WarrickiD· 2 shared Baozhen ZhangiD· 1 shared Fan Song· 1 shared Feng YueiD· 1 shared Hikmat Al-Ahmadie· 1 shared Hongbo YangiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

David J. DeGraffORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GenomicsGenome biologyPeer-reviewedApr 15, 2021

Subtype-specific epigenomic landscape and 3D genome structure in bladder cancer

Tejaswi Iyyanki, Baozhen Zhang, Qixuan Wang…·Feng Yue

This study identifies subtype-specific epigenomic and 3D genome structures in bladder cancer, linking NPAS2 to luminal subtype regulation and clinical outcomes.

58 citations

humanbulk RNA-seq

Cancer BiologybioRxivPreprintSep 7, 2018

Repression of Transcription Factor AP-2 Alpha by Peroxisome Proliferator Activated Receptor Gamma Reveals a Novel Transcriptional Circuit in basal-squamous Bladder Cancer

Hironobu Yamashita, Yuka Imamura Kawasawa, Lauren Shuman…·David J. DeGraff

This study identifies PPARγ repression of TFAP2A and TFAP2C as drivers of the aggressive basal-squamous bladder cancer subtype through RNA-seq and functional analysis.

DOI 10.1101/401307

humanbulk RNA-seq