Author

Gonché Danesh

Centre National de la Recherche ScientifiqueORCID 0000-0001-8688-7666Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:phylogenetics / evolution· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Samuel AlizoniD· 2 shared Benoît VisseauxiD· 1 shared Corentin BoenneciD· 1 shared Emma SaulnieriD· 1 shared Laura Verdurme· 1 shared Marc ChoisyiD· 1 shared Mathilde Roussel· 1 shared Olivier GascueliD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Samuel AlizonORCID

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2 papers

Recent·Most cited

BioinformaticsPeer Community JournalPeer-reviewedOct 16, 2023

COVFlow: phylodynamics analyses of viruses from selected SARS-CoV-2 genome sequences

Gonché Danesh, Corentin Boennec, Laura Verdurme…·Samuel Alizon

COVFlow enables phylodynamic analysis of SARS-CoV-2 sequences by selecting data from GISAID, performing phylogenetic analysis, and generating input for Beast2.

2 citations

viruswhole-genome sequencing

𝕏 PostBluesky

BioinformaticsMethods in Ecology and EvolutionPeer-reviewedDec 12, 2022

TiPS: rapidly simulating trajectories and phylogenies from compartmental models

Gonché Danesh, Emma Saulnier, Olivier Gascuel…·Samuel Alizon

TiPS generates trajectories and phylogenetic trees from compartmental models using stochastic simulations and coalescent methods, with an R package for flexible and efficient modeling.

11 citations

statistical modelbenchmarking

𝕏 PostBluesky