Marc Choisy

The paper introduces the denim R package for deterministic compartmental models with flexible dwell time distributions, improving epidemiological modeling accuracy.

This study combines experimental, theoretical, and statistical approaches to improve the quantitative validation of models predicting virulence evolution in bacteriophages.

TiPS generates trajectories and phylogenetic trees from compartmental models using stochastic simulations and coalescent methods, with an R package for flexible and efficient modeling.