Author

Joe Heffer

University of SheffieldORCID 0000-0001-8733-1117Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Benjamin B. LindseyiD· 2 shared Dennis Y.Q. WangiD· 2 shared Katie Johnson· 2 shared Luke R. GreeniD· 2 shared Matthew D. ParkeriD· 2 shared Mohammad RazaiD· 2 shared Shay LearyiD· 2 shared Silvana GaudieriiD· 2 shared

Activity by Year

2021-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Benjamin B. LindseyORCID

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2 papers

Recent·Most cited

BioinformaticsGenome ResearchPeer-reviewedApr 1, 2021

periscope: Sub-Genomic RNA Identification in SARS-CoV-2 Genomic Sequencing Data

Matthew D. Parker, Benjamin B. Lindsey, Shay Leary…·Thushan I. de Silva

Periscope identifies and quantifies sub-genomic RNAs in SARS-CoV-2 genomic data, detecting canonical and non-canonical sgRNAs with high fidelity.

5 citations

humanwhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 2, 2021

Altered Subgenomic RNA Expression in SARS-CoV-2 B.1.1.7 Infections

Matthew D. Parker, Benjamin B. Lindsey, Dhruv R. Shah…·Thushan I. de Silva

The paper shows that B.1.1.7 SARS-CoV-2 lineage has increased subgenomic RNA expression compared to other lineages, with a noncanonical sgRNA near ORF9b showing a 16-fold increase in median expression.

30 citations

humanwhole-genome sequencing

𝕏 PostBluesky