Jens Boenigk

This study shows river sediment microbiomes are highly sensitive to reduced flow velocity, leading to altered community compositions and stress responses that recover after two weeks.

This study examines how heatwaves affect freshwater flagellates through single-strain and mixed culture experiments, showing temperature and density-dependent factors influence growth and community composition.

Natrix is a Snakemake-based workflow for preprocessing and analyzing amplicon sequencing data, providing reproducible and scalable processing from quality assessment to taxonomic assignment.

TaxMapper improves metatranscriptome analysis of eukaryotic microorganisms by providing a reference database, a mapping tool, and an automated workflow for taxonomic and functional annotation.