Author

Benjamin Penaud

Centre National de la Recherche ScientifiqueORCID 0000-0001-8881-9253Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:C. elegans· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Nicolas BierneiD· 2 shared Benoît LaurentiD· 1 shared Bernard SlippersiD· 1 shared Brenda Diana WingfieldiD· 1 shared Camille RouxiD· 1 shared CÉLINE M. O. REISSERiD· 1 shared Christelle FraïsséiD· 1 shared Florence CornetteiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersGenetics

Nicolas BierneORCID

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Author profile →

3 papers

Recent·Most cited

GeneticsbioRxivPreprintOct 4, 2026

Adaptive introgression in subdivided populations leaves distinct genomic footprints under global and local selection: a case study in Ciona intestinalis

Manon Le Goff, Frédérique Cerqueira, Benjamin Penaud…·Nicolas Bierne

The paper investigates adaptive introgression in subdivided populations, finding no correlation between adaptive allele frequency and introgressed tract length, suggesting local adaptation rather than a traveling wave.

DOI 10.64898/2026.09.29.754965

C. elegansDNA methylation

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Evolutionary BiologybioRxivPreprintOct 2, 2026

Parallel differentiation extends beyond chromosomal inversions to small genomic islands on a background of rampant gene flow in the European flat oyster (Ostrea edulis)

Lila Colston-Nepali, Paul Doniol‐Valcroze, Benjamin Penaud…·Nicolas Bierne

The paper identifies genomic islands of parallel differentiation in the European flat oyster, showing they act as barriers to gene flow despite overall rampant gene flow.

DOI 10.64898/2026.09.28.755087

non-human primatewhole-genome sequencing

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GenomicsbioRxivPreprintMar 26, 2025

Chromosome-level genome assemblies for the latent pine pathogen, Diplodia sapinea, reveal two rapidly evolving accessory chromosomes

Preston L. Shaw, Bernard Slippers, Brenda Diana Wingfield…·Tuan Anh Duong

This study presents chromosome-level genome assemblies of Diplodia sapinea, identifying two accessory chromosomes that show rapid evolution and potential horizontal transfer.

DOI 10.1101/2025.03.26.645563

fungi (other)whole-genome sequencing

𝕏 PostBluesky