Author

Shixu He

University of CopenhagenORCID 0000-0001-8890-0844Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Organism:human· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Organism:mouse· 1 Research Focus:phylogenetics / evolution· 1 Assay:proteomics· 1

Frequent Co-Authors

Anders AlbrechtseniD· 2 shared Frederik Filip StægeriD· 2 shared Ida MoltkeiD· 2 shared Renpeng DingiD· 2 shared Yan ZhouiD· 2 shared Anne Cathrine B. ThueseniD· 1 shared Charles MasembeiD· 1 shared Christina Viskum Lytken LarseniD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersGenomics

Anders AlbrechtsenORCID

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4 papers

Recent·Most cited

GenomicsiSciencePeer-reviewedAug 18, 2026

From deserts to forests: sequencing of the giant forest hog completes the genomic history of the African Suids

Marta Maria Ciucani, Sabhrina Gita Aninta, Nuno Filipe Gomes Martins…·Rasmus Heller

This paper presents the first whole-genome data for the giant forest hog, revealing its evolutionary relationship with warthogs and significant genetic differentiation between populations.

DOI 10.1016/j.isci.2026.117121

whole-genome sequencingstatistical model

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Genetic & Genomic MedicineThe American Journal of Human GeneticsPeer-reviewedNov 12, 2025

Genetic regulation of the plasma proteome and its link to cardiometabolic disease in Greenlandic Inuit

Sara Elizabeth Stinson, Renzo F. Balboa, Mette Korre Andersen…·Torben F. Hansen

This study identifies 251 genetic variants influencing plasma proteins in Greenlandic Inuit, revealing population-specific associations with cardiometabolic disease.

8 citationstop 4%

humanproteomics

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GenomicsMicroorganismsPeer-reviewedOct 14, 2023

A pipeline for constructing reference genomes for large cohort-specific metagenome compression

L. Wang, Renpeng Ding, Shixu He…·Yan Zhou

The paper presents a pipeline to create simplified reference genomes for metagenomic data compression, achieving high compression ratios across multiple datasets.

2 citations

humanmetagenomics

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BioinformaticsbioRxivPreprintOct 5, 2021

A Probabilistic Approach For Registration Of Multi-Modal Spatial Transcriptomics Data

Yu Qiang, Shixu He, Renpeng Ding…·Karl Rohr

This paper introduces a probabilistic method for registering multi-modal spatial transcriptomics data and demonstrates its accuracy on synthetic and real mouse brain images.

1 citation

mousespatial transcriptomics

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