Author

Filipe Pereira

Universidade do PortoORCID 0000-0001-8950-1036Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Research Focus:phylogenetics / evolution· 2 Organism:virus· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:multiple species· 1

Frequent Co-Authors

João CarneiroiD· 2 shared A. Da SilvaiD· 1 shared Alison Sutherland· 1 shared Amirhossein ManzourolajdadiD· 1 shared Amparo M. MartíneziD· 1 shared Beate Berger· 1 shared Benjamin D. RoseniD· 1 shared C. CoutoiD· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersBioinformatics

João CarneiroORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 9, 2021

Evidence for a long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2

Okiemute Beatrice Omoru, Filipe Pereira, Sarath Chandra Janga, Amirhossein Manzourolajdad

The paper identifies a unique long-range RNA-RNA interaction between Spike and ORF8 in SARS-CoV-2 that is not present in SARS-CoV, supported by sequence variation and in-silico predictions.

DOI 10.1101/2021.11.09.467911

virusstatistical model

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BioinformaticsbioRxivPreprintApr 19, 2020

CoV2ID: Detection and Therapeutics Oligo Database for SARS-CoV-2

João Carneiro, Catarina Gomes, C. Couto, Filipe Pereira

CoV2ID evaluates molecular methods for SARS-CoV-2 detection and treatment by analyzing oligonucleotide sequences and genetic diversity.

10 citations

viruswhole-genome sequencing

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GeneticsbioRxivPreprintFeb 17, 2020

Phylogeny and distribution of Y-chromosomal haplotypes in domestic, ancient and wild goats

Isaäc J. Nijman, Benjamin D. Rosen, Zhuqing Zheng…·Johannes Arjen Lenstra

This study analyzes Y-chromosomal haplotypes in domestic, ancient, and wild goats to reconstruct their population history and phylogeographic patterns.

6 citations

multiple specieswhole-genome sequencing

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BioinformaticsbioRxivPreprintMay 2, 2019

A web-based platform of nucleotide sequence alignments of plants

Chiara Santos, João Carneiro, Filipe Pereira

The paper introduces PlantAligDB, a web-based resource providing curated nucleotide sequence alignments for plant research, enabling efficient data access and analysis.

4 citations

plant (other)DNA methylation

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