Author

Yuting Xiao

Carnegie Mellon UniversityORCID 0000-0001-8992-0601Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Organism:multiple species· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:protein folding & dynamics· 1 Approach:statistical model· 1

Frequent Co-Authors

Dannie DurandiD· 2 shared Maureen StolzeriD· 2 shared Larry WassermaniD· 1 shared Xiaoyue CuiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 5 mutual co-author links

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2 shared papersEvolutionary Biology

Dannie DurandORCID

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2 papers

Recent·Most cited

Evolutionary BiologyBioinformatics AdvancesPeer-reviewedJan 1, 2026

Vector semantics of multidomain protein architectures

Xiaoyue Cui, Yuting Xiao, Maureen Stolzer, Dannie Durand

The paper uses vector embeddings to model multidomain protein architectures and finds that contextual relationships between domains influence functional similarity.

1 citation

protein sequencedeep learning

𝕏 PostBluesky

Evolutionary BiologyJournal of Molecular EvolutionPeer-reviewedDec 1, 2025

Evolution of the Metazoan Protein Domain Toolkit Revealed by a Birth-Death-Gain Model

Yuting Xiao, Maureen Stolzer, Larry Wasserman, Dannie Durand

The paper uses a Birth-Death-Gain model to analyze the evolution of protein domains in metazoa, finding that domains involved in metazoan innovations evolve faster and that domain repertoires undergo ongoing remodeling.

4 citations

multiple speciesprotein sequence

𝕏 PostBluesky