Author

Xiaoyue Cui

Carnegie Mellon UniversityORCID 0000-0002-9838-553XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Approach:deep learning· 1 Research Focus:protein folding & dynamics· 1 Approach:statistical model· 1

Frequent Co-Authors

Dannie DurandiD· 2 shared Gautam IyeriD· 1 shared Maureen StolzeriD· 1 shared Yuting XiaoiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 4 mutual co-author links

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2 shared papersBioinformatics

Dannie DurandORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 18, 2026

A unified smoothing framework for protein domain bigram model

Xiaoyue Cui, Gautam Iyer, Dannie Durand

The paper introduces a unified smoothing framework for protein domain bigram models, distinguishing between biologically incompatible and undersampled domain pairs.

DOI 10.64898/2026.06.14.732219

protein sequencestatistical model

𝕏 PostBluesky

Evolutionary BiologyBioinformatics AdvancesPeer-reviewedJan 1, 2026

Vector semantics of multidomain protein architectures

Xiaoyue Cui, Yuting Xiao, Maureen Stolzer, Dannie Durand

The paper uses vector embeddings to model multidomain protein architectures and finds that contextual relationships between domains influence functional similarity.

1 citation

protein sequencedeep learning

𝕏 PostBluesky