Author

Anže Švara

Cornell UniversityORCID 0000-0001-9025-7253Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Research Focus:genome assembly· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Assay:DNA methylation· 1 Approach:graph neural network· 1 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Awais KhaniD· 3 shared Hana Feulner· 2 shared Zhangjun FeiiD· 2 shared Aafreen Sakina· 1 shared Andrzej Kilian· 1 shared David HickokiD· 1 shared Honghe SuniD· 1 shared Jeffrey C. Glaubitz· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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3 shared papersGenomics

Awais KhanORCID

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3 papers

Recent·Most cited

Graph-based pangenome of Venturia inaequalis, the apple scab fungus, reveals structural variants associated with population differentiation

Hana Feulner, Anže Švara, Xuebo Zhao, Zhangjun Fei, Awais Khan

The paper constructs a graph-based pangenome of Venturia inaequalis, identifies structural variants linked to population differentiation, and reveals gene repertoire conservation and virulence-associated diversity.

bioRxiv · Sep 25, 2026 · PreprintGenomics

A pan-generic marker panel for apples to enable genetic research and breeding across Malus species

Aafreen Sakina, Richard Tegtmeier, Hana Feulner, David Hickok, Anže Švara, Patrick Cho, Matthew Clark, Andrzej Kilian, Jeffrey C. Glaubitz, Qi Sun, Awais Khan

The paper develops a pan-generic 3K DArTag marker panel for Malus species to enable genetic research and breeding, showing strong cross-species transferability and utility for QTL mapping and marker-assisted selection.

Euphytica · Oct 1, 2025Peer-reviewedGenetics

Advancing apple genetics research: Malus coronaria and Malus ioensis genomes and a gene family-based pangenome of native North American apples

Anže Švara, Honghe Sun, Zhangjun Fei, Awais Khan

This study presents high-quality genome assemblies and a gene family-based pangenome for two native North American apple species, providing resources for breeding and understanding their adaptation.

DNA Research · Aug 26, 2024Peer-reviewedGenomics