Author

Matthew Clark

Duke UniversityPrimary ORCID profile (0000-0002-9348-3528 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Matthew ClarkiD1 paper

Biology Disciplines

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Genetics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Aafreen Sakina· 1 shared Andrew Jesse ConnelliD· 1 shared Andrzej Kilian· 1 shared Anže ŠvaraiD· 1 shared Ashwin N. SkellyiD· 1 shared Awais KhaniD· 1 shared Barton F. HaynesiD· 1 shared Beatrice H. HahniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenetics

Aafreen Sakina

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2 papers

Recent·Most cited

Shared Maturation Pathways of HIV-1 Envelope-reactive V3-glycan bnAb Lineages in Human and Rhesus Macaque

Matthew Clark, Hui Li, Mitchell Martin, Tyler D. Evangelous, S. Gobeil, Madison Berry, Kshitij Wagh, Elena E. Giorgi, Michael P. Hogarty, Chengyan Zhao, Shuyi Wang, Lorie Marchitto, Wenge Ding, Younghoon Park, Juliette M. Rando, , Wilton B. Williams

The paper identifies shared maturation pathways of V3-glycan broadly neutralizing antibody lineages in humans and rhesus macaques, revealing convergent mutations and evolution patterns.

bioRxiv · Jan 30, 2026 · PreprintImmunology

A pan-generic marker panel for apples to enable genetic research and breeding across Malus species

Aafreen Sakina, Richard Tegtmeier, Hana Feulner, David Hickok, Anže Švara, Patrick Cho, Matthew Clark, Andrzej Kilian, Jeffrey C. Glaubitz, Qi Sun, Awais Khan

The paper develops a pan-generic 3K DArTag marker panel for Malus species to enable genetic research and breeding, showing strong cross-species transferability and utility for QTL mapping and marker-assisted selection.

Euphytica · Oct 1, 2025Peer-reviewedGenetics