Honghe Sun

The paper constructs a graph-based pangenome of Cucurbita pepo to study adaptive evolution, identifying structural variants and showing parallel domestication and environmental adaptation.

This study constructs a watermelon super-pangenome from 138 genomes, identifies over a million structural variants, and develops genomic prediction models for 18 traits to advance precision breeding.

The paper constructs a cucumber pangenome to analyze structural variant dynamics during domestication and breeding, finding SVs are purged more than SNPs and improving genomic prediction accuracy.

This study presents a phased chromosome-level genome assembly of sweetpotato, revealing its origin from a wild tetraploid relative and identifying genetic relationships with other progenitors.

This study presents a haplotype-resolved genome assembly and variation map of Rosa hybrida, revealing domestication history and genetic contributions from wild species.

This study presents high-quality genome assemblies and a gene family-based pangenome for two native North American apple species, providing resources for breeding and understanding their adaptation.

This study reports high-quality genome sequences of C. maxima and C. moschata, revealing an allotetraploidization event and long-term karyotype stability in Cucurbita genomes.