Author

Rui Geng

Wayne State UniversityORCID 0000-0001-9028-0031Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Benjamin L. KidderiD· 2 shared Hongwei ZhouiD· 1 shared Lin LiuiD· 1 shared Luo Mingyue· 1 shared Tingting ZhangiD· 1 shared Xue LiuiD· 1 shared Yongmei HuiD· 1 shared Yuzhang He· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 21 mutual co-author links

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2 shared papersDevelopmental Biology

Benjamin L. KidderORCID

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3 papers

Recent·Most cited

Developmental BiologybioRxivPreprintSep 25, 2025

Stable Maintenance of Two-Cell-Like Cells from Embryonic Stem Cells Reveals Chromatin and Super Enhancer Regulation of MERVL Elements

Rui Geng, Benjamin L. Kidder

The paper establishes stable 2C-like cells from ESCs, showing persistent MERVL expression and expanded developmental potential through epigenomic and transcriptomic analysis.

DOI 10.1101/2025.09.25.678376

mousebulk RNA-seq

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Developmental BiologybioRxivPreprintSep 16, 2025

Automated Image-Based Profiling of Pluripotent Stem Cell Colonies

Rui Geng, Benjamin L. Kidder

ColonyQuant automates image analysis of pluripotent stem cell colonies, revealing dose-dependent morphological and functional changes in response to a KDM4 inhibitor.

1 citation

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MicrobiologybioRxivPreprintJul 17, 2024

Equip Fusobacterium nucleatum genetic tool kits with compatible shuttle vectors and engineered intermediatory E. coli strains for enhanced transformation efficiency

Lin Liu, Yuzhang He, Tingting Zhang…·Xue Liu

This paper develops genetic tools for Fusobacterium nucleatum by engineering E. coli intermediates and shuttle vectors, achieving 5000 transformants per microgram plasmid.

4 citations

experimental assay

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