Author

Sebastião van Uden

ORCID 0000-0001-9031-2371Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Daniela Peneda PachecoiD· 2 shared João SobraliD· 2 shared Livia VisaiiD· 2 shared Miguel AntunesiD· 2 shared Natalia Suárez VargasiD· 2 shared Paola PetriniiD· 2 shared Sonja VisentiniD· 2 shared Abdul MateeniD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersMicrobiology

Daniela Peneda PachecoORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Universal-Bac3Gel: a 3D Biofilm-Relevant Matrix that Supports In Vitro Growth and Biofilm Formation of ESKAPE Pathogens.

Emanuela Peluso, Sebastião van Uden, Sonja Visentin, Paola Petrini, Daniela Peneda Pacheco, Livia Visai

This paper evaluates Universal-Bac3Gel as a 3D matrix for studying ESKAPE pathogens, showing successful bacterial growth and species-specific biofilm formation.

MicrobiologyOpen · Aug 1, 2026Peer-reviewedMicrobiology

Gut3Gel: A High Throughput Mucus Model for Culturing Human Intestinal Microbiota

Natalia Suárez Vargas, Miguel Antunes, João Sobral, Carolina Silva, Francisco Sousa, Olga Valentina Garbero, Anna Kolková, Livia Visai, Claudio Medana, Sonja Visentin, Paola Petrini, Sebastião van Uden, Daniela Peneda Pacheco

Gut3Gel is a new in vitro mucus model that supports diverse intestinal microbiota growth and metabolic activity, offering a scalable platform for microbiota research.

Gut Microbiology · Oct 23, 2025Peer-reviewedMicrobiology

Gut3Gel as an in vitro model to investigate dietary modulation of the intestinal microbiota: An inulin supplementation case study

Miguel Antunes, Lucy Jongen, Abdul Mateen, João Sobral, Sebastião van Uden, Natalia Suárez Vargas, Daniela Pacheco

The paper evaluates Gut3Gel as a model to study inulin's effects on the gut microbiota, finding it captures inter-individual responses and prebiotic effects.

bioRxiv · May 29, 2025 · PreprintMicrobiology