Author

Ben O. Oyserman

Netherlands Institute of EcologyORCID 0000-0001-9052-2651Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1

Frequent Co-Authors

Daniel R. NogueraiD· 2 shared Elizabeth McDanieliD· 2 shared Katherine D. McMahoniD· 2 shared Adam OssowickiiD· 1 shared Chris Hames· 1 shared Eng Hoe Khor· 1 shared Enrichetta MiletiiD· 1 shared Francisco Moya‐FloresiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenomics

Daniel R. NogueraORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintSep 23, 2026

Scalable Agricultural Microbiome Sampling: Operational Definitions, Pooling Strategies, and Preservation Methods

Adam Ossowicki, Thom Griffioen, Enrichetta Mileti…·Ben O. Oyserman

The paper evaluates rhizosphere sampling methods, introducing RhizoCore to improve reproducibility and scalability in agricultural microbiome studies.

DOI 10.64898/2026.05.19.725853

metagenomicsexperimental assay

𝕏 PostBluesky

GenomicsISME CommunicationsPeer-reviewedNov 7, 2022

TbasCO: Trait-based Comparative 'Omics Identifies Ecosystem-Level and Niche-Differentiating Adaptations of an Engineered Microbiome

Elizabeth McDaniel, Joris J.M. van Steenbrugge, Daniel R. Noguera…·Ben O. Oyserman

The paper introduces TbasCO, a trait-based comparative omics approach that identifies ecosystem-level and niche-differentiating adaptations in microbial communities using genome-resolved time-series metatranscriptomics.

9 citations

bacteria (other)metagenomics

𝕏 PostBluesky

GenomicsmSystemsPeer-reviewedJul 6, 2021

Metabolic differentiation of co-occurring Accumulibacter clades revealed through genome-resolved metatranscriptomics

Elizabeth McDaniel, Francisco Moya‐Flores, Natalie Keene Beach…·Katherine D. McMahon

The paper uses genome-resolved metatranscriptomics to analyze gene expression differences among co-occurring Accumulibacter clades in a wastewater treatment bioreactor, revealing functional distinctions.

31 citations

metagenomicsstatistical model

𝕏 PostBluesky