Author

Judith E. Risse

Netherlands Institute of EcologyORCID 0000-0001-9072-8633Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Ecology· 1 Genetics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Carlos Victor de LannoyiD· 2 shared Dick de RidderiD· 2 shared Ayke HalleriD· 1 shared Bernice SepersiD· 1 shared Kees van OersiD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 4 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Carlos Victor de LannoyORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Independent avian epigenetic clocks for aging and development

Ayke Haller, Judith E. Risse, Bernice Sepers, Kees van Oers

The paper develops epigenetic clocks for aging and development in great tits using DNA methylation data, showing accurate age prediction and biological aging differences in nestlings.

Molecular Ecology Resources · Jun 3, 2025Peer-reviewedEcology

poreTally: run and publish de novo Nanopore assembler benchmarks

Carlos Victor de Lannoy, Judith E. Risse, Dick de Ridder

poreTally benchmarks de novo Nanopore assembly tools by automatically assembling, analyzing, and reporting results for sharing and collective benchmarking.

Bioinformatics · Dec 21, 2018Peer-reviewedBioinformatics

A Sequencer Coming Of Age: De Novo Genome Assembly Using MinION Reads

Carlos Victor de Lannoy, Dick de Ridder, Judith E. Risse

This paper reviews the MinION's utility for de novo genome assembly, highlighting its potential for portable and affordable sequencing despite current errors, and calls for benchmarking due to rapid development.

F1000Research · Dec 12, 2017Peer-reviewedGenetics