Author

Jaclyn A. Biegel

University of Southern CaliforniaORCID 0000-0001-9270-6411Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:phylogenetics / evolution· 2 Research Focus:variant calling· 2 Research Focus:variant effect prediction· 2 Organism:virus· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Alexander Russell JudkinsiD· 3 shared Jennifer Dien BardiD· 3 shared Li SheniD· 3 shared Xiaowu GaiiD· 3 shared Timothy Junius TricheiD· 2 shared Alex Ryutov· 1 shared Ananthanarayanan Govindarajan· 1 shared David Ruble· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Alexander Russell JudkinsORCID

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3 papers

Recent·Most cited

GenomicsEmerging Microbes & InfectionsPeer-reviewedJan 1, 2021

Emerging variants of concern in SARS-CoV-2 membrane protein: a highly conserved target with potential pathological and therapeutic implications

Li Shen, Jennifer Dien Bard, Timothy Junius Triche…·Xiaowu Gai

The paper identifies a rapid increase in the SARS-CoV-2 M gene mutation I82T and its association with a new sub-B.1 clade, suggesting potential biological fitness and implications for surveillance.

54 citationstop 4%

whole-genome sequencingstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintJul 9, 2020

Comprehensive variant and haplotype landscapes of 50,500 global SARS-CoV-2 isolates and accelerating accumulation of country-private variant profiles

Li Shen, Jennifer Dien Bard, Jaclyn A. Biegel…·Xiaowu Gai

The paper analyzes 50,500 SARS-CoV-2 isolates to map global variant and haplotype landscapes, identifying country-private variants and haplotypes that increased with travel restrictions.

1 citation

viruswhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMay 11, 2020

Children's Hospital Los Angeles COVID-19 Analysis Research Database (CARD) - A Resource for Rapid SARS-CoV-2 Genome Identification Using Interactive Online Phylogenetic Tools

Li Shen, Dennis T. Maglinte, Dejerianne G. Ostrow…·Xiaowu Gai

The paper introduces CARD, a database for SARS-CoV-2 genomic surveillance, enabling rapid variant identification and phylogenetic analysis of viral isolates.

12 citations

viruswhole-genome sequencing

𝕏 PostBluesky