ANTHONY J. KUSALIK

This paper investigates gene set overlap as a cause of low specificity in over-representation analysis and shows a strong negative correlation between overlap and specificity.

StoHi-C uses t-SNE to predict 3D genome structures from Hi-C data, improving the clarity of fission yeast genomic organization principles.

The paper introduces non-procedural methods for 3D genome reconstruction from Hi-C data, showing they can accurately model fission yeast genome structure.

The paper develops a graph-based visualization method for Hi-C datasets to better represent 3D genomic organization, showing improved insights into genome structure changes in a fission yeast mutant.

WeSeqMiner is a Weka package that provides filters for extracting numerical features from sequence data to build machine learning models.