Donald R. Campbell

The paper introduces a standard for unambiguously representing, retrieving, and comparing reference genomes and transcriptomes, revealing inconsistencies across 60 human and 36 mouse references.

Atacformer is a transformer-based model for scATAC-seq data analysis that improves clustering, cell-type annotation, and cross-modal alignment with RNA-seq data.

BEDMS standardizes genomic interval metadata by predicting standardized attributes using trained models and supports custom schemas for improved data interoperability.