Oleksandr Khoroshevskyi

Atacformer is a transformer-based model for scATAC-seq data analysis that improves clustering, cell-type annotation, and cross-modal alignment with RNA-seq data.

BEDMS standardizes genomic interval metadata by predicting standardized attributes using trained models and supports custom schemas for improved data interoperability.

PEPhub is a database and web interface for sharing, editing, and validating biological sample metadata, enabling fast semantic search and interoperability.