M. Luz Calle

This paper provides theoretical analysis of bias in differential abundance estimation using compositional and log-ratio transformations in microbiome data.

This study examines how gestational antibiotics affect maternal and offspring gut microbiota and growth in pigs, finding altered microbial composition and growth patterns in piglets.

The paper identifies co-occurring antimicrobial resistance genes (ARGs) in metagenomic datasets to highlight potential co-selection in resistomes across different environments.

The paper identifies brain structure signatures linked to Alzheimer's genetic risk across disease stages using compositional data analysis.

The paper introduces a compositional data analysis algorithm for inferring dynamic microbial signatures in longitudinal studies using infant microbiome data.

This study investigates host genetic associations with gut microbiota traits in HIV-1-infected subjects but finds no significant genetic associations after multiple comparison correction.

The paper introduces a new method for microbiome analysis that identifies balances between groups of taxa instead of testing individual taxa, improving the interpretation of compositional data.