Author

Javier Rivera

Boehringer Ingelheim (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Genomics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

Anand VenkataramaniD· 1 shared Athena Davis· 1 shared Atul Tandon· 1 shared Aviva Mazurek· 1 shared Beatriz MotheiD· 1 shared Bonaventura ClotetiD· 1 shared Brian S. ClarkiD· 1 shared Brittany Jones· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperBiochemistry

Anand VenkataramanORCID

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Author profile →

4 papers

Recent·Most cited

Manganese homeostasis drives the Stenotrophomonas maltophilia oxidative stress defense and replication in Acanthamoeba castellanii phagosomes

Fulvia-Stefany Argueta-Zepeda, Javier Rivera, Júlio César Valerdi-Negreros, Christopher Rensing, Pablo Vinuesa

This study identifies a manganese homeostasis network in S. maltophilia that supports oxidative stress defense and replication within Acanthamoeba phagosomes.

bioRxiv · Oct 14, 2025 · PreprintMicrobiology

Predicting the Purity of Multispecific Antibodies From Sequence Using Machine Learning: Methods and Applications

Aviva Mazurek, Athena Davis, Stephen R. Comeau, Kenny Tsang, Javier Rivera, Zhong-Fu Huang, John Holt, Sandeep Kumar, Srinath Kasturirangan

This paper uses machine learning to predict antibody purity from sequence and format data, showing it can effectively estimate monomer percentage in multispecific antibodies.

bioRxiv · Dec 5, 2023 · PreprintMolecular Biology

Host genetic associations with the gut microbiota in HIV-1-infected subjects: a pilot exploratory study

Yolanda Guillén, Marc Noguera-Julián, Javier Rivera, María Casadellà, Muntsa Rocafort, Mariona Parera, Beatriz Mothe, Josep Coll, Jorge Saz, Jordi Navarro, M. Crespo Casal, Eugènia Negredo, Christian Brander, M. Luz Calle, Bonaventura Clotet, Roger Paredes

This study investigates host genetic associations with gut microbiota traits in HIV-1-infected subjects but finds no significant genetic associations after multiple comparison correction.

bioRxiv · Sep 29, 2018 · PreprintGenomics

A toolbox of immunoprecipitation-grade monoclonal antibodies against human transcription factors.

Anand Venkataraman, Kun Yang, Jose Irizarry, Mark Mackiewicz, Paolo Mita, Zheng Kuang, Lin Xue, Devlina Ghosh, Shuang Liu, Pedro Ramos, Shaohui Hu, Diane Bayron, Sarah Keegan, Richard Saul, Simona Colantonio, , Seth Blackshaw

The paper develops a collection of 1406 validated monoclonal antibodies against human transcription factors and identifies factors contributing to their successful generation.

bioRxiv · Mar 16, 2017 · PreprintBiochemistry