BioinformaticsbioRxivPreprint
Quantifying Protein-Protein Interaction with a Spatial Attention Kinetic Graph Neural Network
Yuzhi Richie Xu, Wei Xia, Chao Zhang…·John Z. H. Zhang
SAKE-PP improves PPI model evaluation by predicting interface RMSD without native references, outperforming AF3 on docking decoys and antibody-antigen complexes.
DOI 10.1101/2025.06.04.657832