Jens Zentgraf

The paper improves a tool for sorting DNA reads in xenograft models, enhancing efficiency for epigenetic analysis.

PanXpress quantifies bacterial gene expression using a pan-transcriptomic gapped k-mer index, achieving high recall and precision in mixed strain samples.

This paper introduces an algorithm for error correction in scRNA-seq data, improving gene expression quantification efficiency and accuracy.

Cleanifier removes human contamination from microbial sequences using a pangenome index and spaced seeds, achieving speed and accuracy comparable to existing tools.

The paper designs spaced seeds that are optimal for worst-case scenarios, enabling robust read mapping even with many sequence differences.

The paper introduces a fast and lightweight alignment-free method for xenograft sorting that outperforms existing approaches in speed while maintaining accuracy.