Author

Inês Alves Ferreira

Saarland UniversityORCID 0009-0001-7233-9519Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Jens ZentgrafiD· 1 shared Johanna Elena SchmitziD· 1 shared Sven RahmanniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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3 top collaborators · 3 mutual co-author links

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1 shared paperBioinformatics

Jens ZentgrafORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintMar 20, 2026

PanXpress: Gene expression quantification with a pan-transcriptomic gapped k-mer index

Inês Alves Ferreira, Jens Zentgraf, Johanna Elena Schmitz, Sven Rahmann

PanXpress quantifies bacterial gene expression using a pan-transcriptomic gapped k-mer index, achieving high recall and precision in mixed strain samples.

DOI 10.64898/2026.03.19.712873

bacteria (other)bulk RNA-seq

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