Author

Shahed Uddin Ahmed Shazib

Purdue University West LafayetteORCID 0000-0001-9470-8568Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 3 Approach:statistical model· 3 Assay:DNA methylation· 2 Assay:whole-genome sequencing· 2 Organism:C. elegans· 1 Approach:comparative / phylogenetic analysis· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Mann Kyoon ShiniD· 2 shared Sergio A. Muñoz-GómeziD· 2 shared Auden Cote‐L’HeureuxiD· 1 shared Emily SimontoniD· 1 shared Jason C. SlotiD· 1 shared JunMo LeeiD· 1 shared Laura A. KatziD· 1 shared Martin Kreutz· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersEvolutionary Biology

Mann Kyoon ShinORCID

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3 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintDec 22, 2025

The phylogenetic context for the origin of a unique purple-green photosymbiosis

Sergio A. Muñoz-Gómez, Megan Sørensen, Shahed Uddin Ahmed Shazib…·Sebastian Hess

This study investigates the evolutionary history of Pseudoblepharisma tenue to understand the factors limiting the frequency of purple photosymbioses.

DOI 10.64898/2025.12.20.694765

multiple speciesDNA methylation

𝕏 PostBluesky

Evolutionary BiologyBMC Ecology and EvolutionPeer-reviewedFeb 27, 2025

Phylogeny and species delimitation of ciliates in the genus Spirostomum (Class, Heterotrichea) using single-cell transcriptomes

Shahed Uddin Ahmed Shazib, Auden Cote‐L’Heureux, Ragib Ahsan…·Mann Kyoon Shin

This study uses single-cell transcriptomes to reveal cryptic species and phylogenetic relationships in Spirostomum ciliates, identifying at least nine cryptic species.

6 citations

scRNA-seqdeep learning

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GenomicsG3 Genes Genomes GeneticsPeer-reviewedOct 21, 2022

Architectural Groups of a Subtelomeric Gene Family Evolve Along Distinct Paths in Candida albicans

Matthew J. Dunn, Shahed Uddin Ahmed Shazib, Emily Simonton…·Matthew Z. Anderson

The paper examines the evolution of the TLO gene family in Candida albicans, revealing distinct evolutionary paths among structural groups and identifying functional motifs.

7 citations

C. elegansDNA methylation

𝕏 PostBluesky