BioinformaticsbioRxivPreprint
TomatoPGFM: A graph-conditioned foundation model for tomato pangenomes
Jinlei Han, Tuerhong Yushan, Juan Wang…·Qinghui Yu
TomatoPGFM is a graph-conditioned foundation model for tomato pangenomes that improves sequence representation using graph context, achieving higher classification performance than DNABERT-2.
DOI 10.64898/2026.08.31.748176