Author

Qinghui Yu

Xinjiang Academy of Agricultural SciencesORCID 0000-0002-9342-5301Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Approach:statistical model· 1

Frequent Co-Authors

Baike Wang· 2 shared Changwei ZhangiD· 1 shared Chunping JiaiD· 1 shared Fangling JiangiD· 1 shared Haitao YangiD· 1 shared Huan WangiD· 1 shared Jiantao ZhaoiD· 1 shared Jie GaoiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Baike Wang

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2 papers

Recent·Most cited

TomatoPGFM: A graph-conditioned foundation model for tomato pangenomes

Jinlei Han, Tuerhong Yushan, Juan Wang, Haitao Yang, Jiantao Zhao, Fangling Jiang, Chunping Jia, Tao Yang, Baike Wang, Changwei Zhang, Qinghui Yu

TomatoPGFM is a graph-conditioned foundation model for tomato pangenomes that improves sequence representation using graph context, achieving higher classification performance than DNABERT-2.

bioRxiv · Sep 1, 2026 · PreprintBioinformatics

Identification and Characterization of Long Non-Coding RNA in Tomato Roots under Salt Stress

Ning Li, Zhongyu Wang, Baike Wang, Juan Wang, Ruiqiang Xu, Tao Yang, Shaoyong Huang, Qinghui Yu, Huan Wang, Jie Gao

This study identifies and characterizes salt stress-responsive lncRNAs in tomato roots, revealing their roles in stress response pathways and contributing to understanding salt tolerance mechanisms.

bioRxiv · Nov 12, 2021 · PreprintBioinformatics