Bart Nijsse

The paper presents a metadata-managed FAIR end-to-end workflow for microbial community Omics data analysis, demonstrating its reliability and reproducibility through mock datasets.

The paper uses genome-resolved metagenomics and metabolic modeling to study microbial interactions in a Dehalobacter-containing community for chlorinated benzene degradation.

This study sequenced Rickettsiella genomes from ticks and used comparative genomics to identify variable metabolic pathways and potential mechanisms for symbiotic interactions with arthropods.

This study uses deep sequencing on 16 Ixodes ricinus ticks to analyze symbionts, revealing genome sequences, transmission modes, and genetic variability in Rickettsia helvetica.

The paper reports an improved genome sequence and annotation of Cutaneotrichosporon oleaginosus ATCC 20509 to support its use as a biotechnological platform for microbial oil production.

The paper introduces FAIR Data Station, a tool for managing and validating metadata in omics studies to support FAIR principles through standardized workflows and metadata export.