Author

Changlin Ke

Wageningen University & ResearchORCID 0009-0001-1350-5644Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Bart NijsseiD· 1 shared Edoardo SaccentiiD· 1 shared Henk J. van LingeniD· 1 shared Jasper J. KoehorstiD· 1 shared Maria Suarez DieziD· 1 shared Marta BaccaroiD· 1 shared N.W. van den BrinkiD· 1 shared Peter J. SchaapiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Bart NijsseORCID

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2 papers

Recent·Most cited

BioinformaticsScientific DataPeer-reviewedSep 8, 2026

A metadata managed FAIR end-to-end workflow for microbial community Omics data analysis

Changlin Ke, Jasper J. Koehorst, Bart Nijsse…·Peter J. Schaap

The paper presents a metadata-managed FAIR end-to-end workflow for microbial community Omics data analysis, demonstrating its reliability and reproducibility through mock datasets.

DOI 10.1038/s41597-026-08224-w

metagenomicsstatistical model

𝕏 PostBluesky

Systems BiologybioRxivPreprintJun 16, 2025

Gene expression profile dynamics of earthworms exposed to ZnO and ZnO:Mn nanomaterials

Henk J. van Lingen, Changlin Ke, Edoardo Saccenti…·Maria Suarez Diez

This study examines the time-dependent gene expression changes in earthworms exposed to ZnO and ZnO:Mn nanomaterials, revealing transient effects on muscle biology and energy metabolism.

DOI 10.1101/2025.06.16.660036

bulk RNA-seqstatistical model

𝕏 PostBluesky