Mechanistic modeling of bacterial translation initiation across growth conditions
The paper develops a mechanistic ODE-based model of E. coli translation to predict how ribosome allocation changes with growth conditions.
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Technical University of MunichORCID 0000-0001-9533-6786Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
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The paper develops a mechanistic ODE-based model of E. coli translation to predict how ribosome allocation changes with growth conditions.
Marleen Beentjes, Ana-Sofia Ortega-Arbulú, Carina Meiners…·Katharina Pflüger‐Grau
This study investigates the metabolic burden in Pseudomonas putida during heterologous protein production, finding that transcript length, not protein size, is the main bottleneck.
Marleen Beentjes, Hannes Löwe, Katharina Pflüger‐Grau, Andreas Kremling
The paper constructs and analyzes a modular T7 RNA polymerase-based gene expression system in Pseudomonas putida to improve heterologous protein production.
The paper compares natural and artificial carbon fixation pathways using computational methods to evaluate their ATP-efficiency and specific activity.
Lukas Bromig, Andreas Kremling, Alberto Marı́n-Sanguino
The paper introduces an ensemble modeling framework to discover design principles in biochemical networks by analyzing successful models and identifying shared features that guide network construction.